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isosurface analysis features  (Oxford Instruments)


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    Structured Review

    Oxford Instruments isosurface analysis features
    Isosurface Analysis Features, supplied by Oxford Instruments, used in various techniques. Bioz Stars score: 99/100, based on 44064 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/analysis+isosurface/Imaris/pmc12449456-445-15-19
    Average 99 stars, based on 44064 article reviews
    isosurface analysis features - by Bioz Stars, 2026-09
    99/100 stars

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    Related Articles

    other:

    Article Title: Three dimensional multiscalar neurovascular nephron connectivity map of the human kidney across the lifespan.
    Article Snippet: To accomplish this, two clipping planes were used to split the junctions of any fused gloms within the analysis isosurface with the Imaris surface cut tool, and the resulting, small in-between regionwasdeleted.

    Article Title: Three dimensional multiscalar neurovascular nephron connectivity map of the human kidney across the lifespan
    Article Snippet: To accomplish this, two clipping planes were used to split the junctions of any fused gloms within the analysis isosurface with the Imaris surface cut tool, and the resulting, small in-between region was deleted.

    Article Title: Three Dimensional Multiscalar Neurovascular Nephron Connectivity Map of the Human Kidney Across the Lifespan
    Article Snippet: To accomplish this, two clipping planes were used to split the junctions of any fused gloms within the analysis isosurface with the Imaris surface cut tool, and the resulting, small in-between region was deleted.



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    extl3/box -mutant zebrafish has defective thymopoiesis that is rescued by injection of EXTL3 wild-type RNA. (A) Extl3/box -mutant fish have shorter pectoral fins (arrows). (B) Immunofluorescence image of RAG2-GFP expression in 6–d postinfection (dpf) extl3/box Tg ( rag2:gfp ) larvae. Arrows indicate the thymus. (C and D) Representative images of <t>isosurface</t> 3D reconstruction (C) and total volume quantification (D) of thymic GFP signal from 6-dpf extl3/box Tg ( rag2:gfp ) larvae. (A–D) Shown are representative data of >50 sibling (sib) and 30 box animals from three independent experiments. (E) Rescue of thymic volume (left) and pectoral fin length (right) in 6-dpf extl3/box Tg ( rag2:gfp ) larvae injected with 100 ng EXTL3 wild-type RNA. Relative fin length indicates the ratio between lengths of fin to eye. n = 2 experiments. Error bars represent SEM. (F) Ext2/dak -mutant fish have shorter pectoral fins. (G and H) Representative images of isosurface 3D reconstruction (G) and total volume quantification (H) of thymic GFP signal from 6-dpf ext2/dak Tg ( rag2:gfp ) larvae. (F–H) Shown are representative images of >50 sibling, 30 box , and 27 dak animals from three independent experiments. Statistical significance was assessed using two-tail unpaired Student’s t test (D) and one-way ANOVA with Bonferroni post-analysis (E and H).
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    Oxford Instruments isosurface analysis
    extl3/box -mutant zebrafish has defective thymopoiesis that is rescued by injection of EXTL3 wild-type RNA. (A) Extl3/box -mutant fish have shorter pectoral fins (arrows). (B) Immunofluorescence image of RAG2-GFP expression in 6–d postinfection (dpf) extl3/box Tg ( rag2:gfp ) larvae. Arrows indicate the thymus. (C and D) Representative images of <t>isosurface</t> 3D reconstruction (C) and total volume quantification (D) of thymic GFP signal from 6-dpf extl3/box Tg ( rag2:gfp ) larvae. (A–D) Shown are representative data of >50 sibling (sib) and 30 box animals from three independent experiments. (E) Rescue of thymic volume (left) and pectoral fin length (right) in 6-dpf extl3/box Tg ( rag2:gfp ) larvae injected with 100 ng EXTL3 wild-type RNA. Relative fin length indicates the ratio between lengths of fin to eye. n = 2 experiments. Error bars represent SEM. (F) Ext2/dak -mutant fish have shorter pectoral fins. (G and H) Representative images of isosurface 3D reconstruction (G) and total volume quantification (H) of thymic GFP signal from 6-dpf ext2/dak Tg ( rag2:gfp ) larvae. (F–H) Shown are representative images of >50 sibling, 30 box , and 27 dak animals from three independent experiments. Statistical significance was assessed using two-tail unpaired Student’s t test (D) and one-way ANOVA with Bonferroni post-analysis (E and H).
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    Oxford Instruments isosurfaces analysis
    extl3/box -mutant zebrafish has defective thymopoiesis that is rescued by injection of EXTL3 wild-type RNA. (A) Extl3/box -mutant fish have shorter pectoral fins (arrows). (B) Immunofluorescence image of RAG2-GFP expression in 6–d postinfection (dpf) extl3/box Tg ( rag2:gfp ) larvae. Arrows indicate the thymus. (C and D) Representative images of <t>isosurface</t> 3D reconstruction (C) and total volume quantification (D) of thymic GFP signal from 6-dpf extl3/box Tg ( rag2:gfp ) larvae. (A–D) Shown are representative data of >50 sibling (sib) and 30 box animals from three independent experiments. (E) Rescue of thymic volume (left) and pectoral fin length (right) in 6-dpf extl3/box Tg ( rag2:gfp ) larvae injected with 100 ng EXTL3 wild-type RNA. Relative fin length indicates the ratio between lengths of fin to eye. n = 2 experiments. Error bars represent SEM. (F) Ext2/dak -mutant fish have shorter pectoral fins. (G and H) Representative images of isosurface 3D reconstruction (G) and total volume quantification (H) of thymic GFP signal from 6-dpf ext2/dak Tg ( rag2:gfp ) larvae. (F–H) Shown are representative images of >50 sibling, 30 box , and 27 dak animals from three independent experiments. Statistical significance was assessed using two-tail unpaired Student’s t test (D) and one-way ANOVA with Bonferroni post-analysis (E and H).
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    Image Search Results


    extl3/box -mutant zebrafish has defective thymopoiesis that is rescued by injection of EXTL3 wild-type RNA. (A) Extl3/box -mutant fish have shorter pectoral fins (arrows). (B) Immunofluorescence image of RAG2-GFP expression in 6–d postinfection (dpf) extl3/box Tg ( rag2:gfp ) larvae. Arrows indicate the thymus. (C and D) Representative images of isosurface 3D reconstruction (C) and total volume quantification (D) of thymic GFP signal from 6-dpf extl3/box Tg ( rag2:gfp ) larvae. (A–D) Shown are representative data of >50 sibling (sib) and 30 box animals from three independent experiments. (E) Rescue of thymic volume (left) and pectoral fin length (right) in 6-dpf extl3/box Tg ( rag2:gfp ) larvae injected with 100 ng EXTL3 wild-type RNA. Relative fin length indicates the ratio between lengths of fin to eye. n = 2 experiments. Error bars represent SEM. (F) Ext2/dak -mutant fish have shorter pectoral fins. (G and H) Representative images of isosurface 3D reconstruction (G) and total volume quantification (H) of thymic GFP signal from 6-dpf ext2/dak Tg ( rag2:gfp ) larvae. (F–H) Shown are representative images of >50 sibling, 30 box , and 27 dak animals from three independent experiments. Statistical significance was assessed using two-tail unpaired Student’s t test (D) and one-way ANOVA with Bonferroni post-analysis (E and H).

    Journal: The Journal of Experimental Medicine

    Article Title: EXTL3 mutations cause skeletal dysplasia, immune deficiency, and developmental delay

    doi: 10.1084/jem.20161525

    Figure Lengend Snippet: extl3/box -mutant zebrafish has defective thymopoiesis that is rescued by injection of EXTL3 wild-type RNA. (A) Extl3/box -mutant fish have shorter pectoral fins (arrows). (B) Immunofluorescence image of RAG2-GFP expression in 6–d postinfection (dpf) extl3/box Tg ( rag2:gfp ) larvae. Arrows indicate the thymus. (C and D) Representative images of isosurface 3D reconstruction (C) and total volume quantification (D) of thymic GFP signal from 6-dpf extl3/box Tg ( rag2:gfp ) larvae. (A–D) Shown are representative data of >50 sibling (sib) and 30 box animals from three independent experiments. (E) Rescue of thymic volume (left) and pectoral fin length (right) in 6-dpf extl3/box Tg ( rag2:gfp ) larvae injected with 100 ng EXTL3 wild-type RNA. Relative fin length indicates the ratio between lengths of fin to eye. n = 2 experiments. Error bars represent SEM. (F) Ext2/dak -mutant fish have shorter pectoral fins. (G and H) Representative images of isosurface 3D reconstruction (G) and total volume quantification (H) of thymic GFP signal from 6-dpf ext2/dak Tg ( rag2:gfp ) larvae. (F–H) Shown are representative images of >50 sibling, 30 box , and 27 dak animals from three independent experiments. Statistical significance was assessed using two-tail unpaired Student’s t test (D) and one-way ANOVA with Bonferroni post-analysis (E and H).

    Article Snippet: Image post-processing and thymus isosurface analysis and quantification were done with Imaris software (Bitplane).

    Techniques: Mutagenesis, Injection, Immunofluorescence, Expressing